CREST 结构变异检测工具安装指南
CREST ( C lipping Re veals St ructure) is a new algorithm for detecting genomic structural variations at base-pair resolution using next-generation sequencing data. article: CREST maps somatic structural variation in cancer genomes with base-pair resolution (2011) download: http://ftp.stjude.org/pub/software/CREST/CREST.tgz tar zxvf CREST.tgz ============= Requirements: ============= Before running CREST, you need to make sure that several pieces of software and/or modules are installed on the system: 1. BLAT software suite, especially blat, gfClient, and gfServer. BLAT can be obtained from these links: BLAT for academic use: http://www.soe.ucsc.edu/~kent BLAT commercial license: http://www.kentinformatics.com/ 2. CAP3 assembly program, available here: CAP3 for academic use: http://seq.cs.iastate.edu/cap3.html CAP3 commercial license: Contact Robin Kolehmainen at Michigan Tech,...